species:   Cocin
pid:       PID1269
parent:    cci-milR-15
paralog:   b
locus:     scaffold_162:30991-31068
matures:   ['UUUCUCUGUGAGUGGCACG', 'UGUCACUCGCAGGGAAAGA']
srr:       SRR9972086
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972086.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972086.cram scaffold_162:30991-31068

1 out of bounds
4 alignments
0 proper strand
0 stranded perfect matches

        *********************                    *********************        
GCGUUGAUCCUUUCUCUGUGAGUGGCACGGGCUCGCCAUCGUCAACGACCAUGUCACUCGCAGGGAAAGAAUCGGCGU
((((((((.((((((((((((((((((..((.(((..........))))).)))))))))))))))))).))))))))
----------UUUCUCUGUGAGUGGCACG------------------------------------------------- l=19 a=0 c
---------------------------------------------------UGUCACUCGCAGGGAAAGA-------- l=19 a=0 c*
----------UUUCUCUGUGAGUGGCACG------------------------------------------------- l=19 a=0 ma
---------------------------------------------------UGUCACUCGCAGGGAAAGA-------- l=19 a=0 ma*


No alignments to locus

mb-01011
ax-1011001
ku-01
ss-110011011100
fn-001
